NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116114_1002051

Scaffold Ga0116114_1002051


Overview

Basic Information
Taxon OID3300009630 Open in IMG/M
Scaffold IDGa0116114_1002051 Open in IMG/M
Source Dataset NamePeatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9500
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (58.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m).4 to .5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000451Metagenome / Metatranscriptome1124Y
F002261Metagenome / Metatranscriptome577Y
F021908Metagenome / Metatranscriptome216Y

Sequences

Protein IDFamilyRBSSequence
Ga0116114_100205110F002261GGAMPNWPSIEAFVDGVISQTFGEPVVYQPVQAGAAQGSAFTLTAVRHLRVREESGAMANFEEISVNSSDFSNPPAKGDWVTAWGAQYVVTTVRQPDAYGMLNLALLQRAS*
Ga0116114_10020513F000451N/AMARLQTVIKRARFVYSPYTATEMQGFAQVFADSIRARIQSGRNIYDQAAAPLKPGLSGRRGYPDYKAARGLQPIRDWTWSGHTLRCLKVLTANENRAVIGFLDEALPGRRMTAAQIAAFNNRREAQWGVSPRDRQAVLAAFLARRVVMLKAA*
Ga0116114_10020515F021908N/ALDGCPACGADWKTIDVSHGPGCPKNLLEEAMDTPNGGLVRRCFRILNAKSIGLTITLADITEEELLVLELIEAGRQEQFRCADTGAQGSR*
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