NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116129_1009374

Scaffold Ga0116129_1009374


Overview

Basic Information
Taxon OID3300009633 Open in IMG/M
Scaffold IDGa0116129_1009374 Open in IMG/M
Source Dataset NamePeatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3895
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m).1 to .2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012478Metagenome / Metatranscriptome280Y
F055483Metagenome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0116129_10093741F055483AGGAGMPDATPGNRGRNRQKVPRIGSKEAAQIFEQCEHLLDSSSVFVENLRQMGFARFLAPLNEQILELAVQPDSWGERTRARLISYVFAGL
Ga0116129_10093745F012478AGGAGGMSQSRGAISFEPLFTAEDIGLRKEANVEHVMKVFITLGEGQASRWIEMPEGVLLLQTVPDEPASGAIYLYDRELQVFYFVVFDLGRDDSLTAAEFDELVTEYNLVSWTAHPALLRRGVAKHAMA*
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Institute for Fundamental Biomedical Research
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