NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116117_1157425

Scaffold Ga0116117_1157425


Overview

Basic Information
Taxon OID3300009635 Open in IMG/M
Scaffold IDGa0116117_1157425 Open in IMG/M
Source Dataset NamePeatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)587
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m).1 to .2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003141Metagenome / Metatranscriptome505Y
F009421Metagenome / Metatranscriptome318Y

Sequences

Protein IDFamilyRBSSequence
Ga0116117_11574251F003141N/ARVPVQVTALRAGRARLREATVFEFAGREHAIFLSTLPLEFDDRVKVQGGNNAEVTEGSVVAVQYHEGRKAVAIRFLHGPCQWVTQT*
Ga0116117_11574252F009421N/AMGDADVSKTMTTLNIPAPTRTEAPRQAQWEEARSVFPIYLALAKQLAIDIPFPPANRNLPEKAELELFSQVQTWLDSMDQRVLVHELRHLLQMTTLNASETGLRALITRHLRKPS

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