NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116113_1015361

Scaffold Ga0116113_1015361


Overview

Basic Information
Taxon OID3300009638 Open in IMG/M
Scaffold IDGa0116113_1015361 Open in IMG/M
Source Dataset NamePeatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1658
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m).1 to .2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003764Metagenome469Y
F004301Metagenome / Metatranscriptome444Y
F080768Metagenome114N

Sequences

Protein IDFamilyRBSSequence
Ga0116113_10153612F004301GGAGMTAMQFSLFDARSADATVGGEPSVNARNAKRQLDTLRKQLATAQADLEDVDYNLSIVAMHQRASREGKIDANWWDAAMRFGMLDPGEEPGYRLGSYPVKVMRWIRHLIFTLNAERRDVLSAIADLEPKVAALSQIIGNAIQ*
Ga0116113_10153613F003764GAGMQIQLDSPYIQDENPAALLAGAEIEAAHLSRCLKIVRLWSQSSTLPRLRHDEMIEEEQRLANLYAATLFEIGSAFGLRAADELKVRIEAACILDDWECPPAEQGLLFPIPNYSATEANPATARK*
Ga0116113_10153615F080768GGAGMQGRRLNPTIHRYEDVELIEVHSEYLECSFLVAKDEWERGKTLLTIFSPLDGNVLGFPHYCLHRDNISAARPKLPDRTTAQPG
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