NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116126_1000721

Scaffold Ga0116126_1000721


Overview

Basic Information
Taxon OID3300009640 Open in IMG/M
Scaffold IDGa0116126_1000721 Open in IMG/M
Source Dataset NamePeatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22849
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (90.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m).4 to .5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006635Metagenome / Metatranscriptome368Y
F008704Metagenome / Metatranscriptome329Y
F052336Metagenome / Metatranscriptome142Y
F087101Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0116126_100072116F052336AGGGGGLTVRELIKKQRELVDSDSPMKRLAGALLIPAVLAERLAGLADRQVGQLLLDEVWPRLNPVGPESTICLHAADRLRGSPTERCPACPRCGSEMIRHIGIDEPDFLECALLGCGLRTQAT*
Ga0116126_100072117F087101GGAMKQTKVHNQQQVPLRVKGEAVKYLSSLPQFHGIPDESLIQIAERRTGLNVPDRWVAVALIIGNRVPIPVPAPDGRPQGKPCEVTAPAKLVAIPGGRIAR*
Ga0116126_100072120F008704GGAGGMDYLHVFVLTSLDLDKSGDVRSRNVAVTFDLFEAEDHRNKGVENDYDVFVVPCDWQEDAARSELISAMRGFRSIVKQMEDEALR*
Ga0116126_100072130F006635AGGAVKVWALVSLLIFLAFGKPHADPPGEWRLTQDSEAIVPDAKLRGQIFRALDAAEKAGTSPTISHFKVRAATVVEIAGQEHVVLGGNTEYDLPEAIHGETSVLNHVTADYGADATRHAVRFIAFYGDYSGGAGSCGDCRDYQLASTDWEHLLVASGLSSDHTVKVTRFADQIVCERNFPEVKAEKIALPPGVLEKIVKSAQEARLGGVTLFTTVRHTGAAGLAYSGKIYRAAGGDDAAFHYRYPIGGLLQQAETERDYFLRAILVSGEQGQWPVISYRDRQYGYEASSFNHEAGKPPIQLILTNGQGEYRMTTFEACLPRAFSTVDFRPEAVKEFIRTHRGDR*
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