Scaffold Ga0116110_1028534

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0116110_1028534

Scaffold Ga0116110_1028534

Overview

Basic Information
Taxon OID	3300009643 Open in IMG/M
Scaffold ID	Ga0116110_1028534 Open in IMG/M
Source Dataset Name	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_40
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2104
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location Name	USA: Minnesota
Coordinates	Lat. (^o)	47.5028	Long. (^o)	-93.4828	Alt. (m)		Depth (m)	.4 to .5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F009261	Metagenome	320	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116110_10285342	F009261	AGGAGG	MLLTPSNTGNVAAGVGVGIFAWGAFLKADKIPWIQKLLTTKRKDATLKWIDKNKGISLLGLETVNFGIHGITNPNSVMFALGNTILNIFMLWVYLPFRMASAAKKNTASVLKGVA*

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