Scaffold Ga0116121

Basic Information
Taxon OID	3300009644 Open in IMG/M
Scaffold ID	Ga0116121_1000044 Open in IMG/M
Source Dataset Name	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_10
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009644 Open in IMG/M

Scaffold ID

Ga0116121_1000044 Open in IMG/M

Source Dataset Name

Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_10

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	61652
Total Scaffold Genes	61 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	44 (72.13%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

61652

Total Scaffold Genes

61 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

44 (72.13%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location Name	USA: Minnesota
Coordinates	Lat. (^o)	47.5028	Long. (^o)	-93.4828	Alt. (m)	Depth (m)	.1 to .2
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Minnesota

Coordinates

Lat. (^o)

47.5028

Long. (^o)

-93.4828

Alt. (m)

Depth (m)

.1 to .2

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001558	Metagenome / Metatranscriptome	671	Y
F001596	Metagenome / Metatranscriptome	666	Y
F001643	Metagenome / Metatranscriptome	659	Y
F003233	Metagenome / Metatranscriptome	499	Y
F004823	Metagenome / Metatranscriptome	422	Y
F010830	Metagenome / Metatranscriptome	298	Y
F017708	Metagenome	239	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116121_100004419	F004823	AGGAG	MYATKVINGVPAIQRDGQSVLRVCDQNWEFANWLCALLNELGHKSELLLNEQGCEWFDANDRAFRRAVHHA*
Ga0116121_100004424	F001596	AGAAG	MSWFHSSAGAGRARDYASSAEIVACFQDQRNVLRRLAFLITGDQATADQAVVHACEITLQGNSPFRDWLLEWAKAATIASAISHGTEAIRVCEATYTDRRCAHVEHLSPGDAEEHAASLDLILGTDANTLIAELDPLCRAILVLRVAIRSSIQDCALRLNVPRAVVLAANCQAMTWLHDGQVKSMEEDHFV*
Ga0116121_100004429	F017708	AGGAG	MPKVIEFYMPKNFRKPLRTVAQPQPGKVIEFCPRTKRSA*
Ga0116121_100004437	F010830	GAG	MLRKLLQIVSLTACLIPAWGKSTSESSFIRQPSTVSIVGPGTVLSVHLLDLPFIKPRYAVKYKTDGGELIEVWTPEKDVLVLEGMHGILTYSTHPEKILSFRVVEQTLTK*
Ga0116121_100004444	F001558	GAGG	MLRVQTQELDGALICRLEGRFTGKGAEEVRALITCCDSKLELVVDLTDVMFIDAIGEEVLLFVKRLGAQFVAETSYSRDICERLQLTFIGKRKSNTPIKGNSGAEGQLLRR*
Ga0116121_10000445	F001643	GGA	MLGELMNIPTDTLIDMLCVIFGGEAVLTATDAVEIEQIQRELQRRSEEQCWSLQAVN*
Ga0116121_100004452	F003233	GAGG	MKLRTFLFAIAILGTVLRPAAAQPKKKTTQVDAPPLERVLSGTSMQSDAVLSDVIARRPEVPLGPQDVLKSYEVAMSLVMEKTSADFSVIVQTQQANQISREQAEYLLLQSYQTAMMQYQVLSALHDVLKHDIDEAAGQQARQSLKTTSSGTVLVVPFPGSAPASR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0116121_1000044

Overview

Ecosystem & Geography

Associated Families

Sequences