NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116132_1109525

Scaffold Ga0116132_1109525


Overview

Basic Information
Taxon OID3300009646 Open in IMG/M
Scaffold IDGa0116132_1109525 Open in IMG/M
Source Dataset NamePeatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_150
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)847
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)1.5 to 1.75
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002015Metagenome / Metatranscriptome604Y
F035513Metagenome / Metatranscriptome172Y

Sequences

Protein IDFamilyRBSSequence
Ga0116132_11095251F002015N/AGAVSELLKPYDARMMRCYPVSTRINHVANDDDECSAPVELAQVQSRLFL*
Ga0116132_11095252F035513AGGMEVRMAGSKDGIKDRLARYRQIKLGVIGRKSGQTISIPVWFVLEDT

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