Scaffold Ga0123326_1269312

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0123326_1269312

Scaffold Ga0123326_1269312

Overview

Basic Information
Taxon OID	3300009647 Open in IMG/M
Scaffold ID	Ga0123326_1269312 Open in IMG/M
Source Dataset Name	Anaerobic biogas reactor microbial communites from Washington, USA - Biogas_R1_A C13 SIP DNA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	509
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Biogas Reactor → Anaerobic Biogas Reactor Microbial Communites From Washington, Usa

Source Dataset Sampling Location
Location Name	Washington, USA
Coordinates	Lat. (^o)	47.6525	Long. (^o)	-122.3049	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F034940	Metagenome / Metatranscriptome	173	Y
F054898	Metagenome / Metatranscriptome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0123326_12693122	F034940	GAGG	MGNDCWYYRPQYAGMTKVCMRQSIVECGRIRRFGLCPIPPDSEAWRRCGFAIGQHEIPAGNEG*
Ga0123326_12693123	F054898	GGCGG	MRAKLKIEETRAGYRCRVCGRRFRAEEAAFVHQSYDCSQNVRTMVEER*

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