NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0116190_1014183

Scaffold Ga0116190_1014183


Overview

Basic Information
Taxon OID3300009655 Open in IMG/M
Scaffold IDGa0116190_1014183 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNTR4_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4353
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameJapan
CoordinatesLat. (o)34.65Long. (o)135.05Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006895Metagenome / Metatranscriptome362Y
F033805Metagenome / Metatranscriptome176Y

Sequences

Protein IDFamilyRBSSequence
Ga0116190_10141831F033805N/AMKNLKLELFNFKKTLDFDSSEVVYIIEGHMNACNDLSEKQVIISLNEKLKSYTYNKEVKSLLENLNSDMAQYELLYELKNLYNVLNSRNQGEMYRHPINVLLQ
Ga0116190_10141832F006895N/AMIGHKFNYDNVFLRDLTVCVLDTFEGKVSWVNRFTKGDVEVKVPFYYSLTGDERFLLDSFADDIVSENRFTELNSDIIPRGHITLTGFNLRSDEFRNPNVWLRSVVEDNTEVKTMLRQLRAIPITVNYSISIMLKTEIDVFNCSQSILNTMWLYNFMYFEYNFLHIDAIMTIPDSKSIETVREKNLTSDNTIKVNFDIEIQTYYPAFGPESQSMEPSRTRWFNNIIQGRYKSQKSSNPNASNNINL*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.