NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116135_1101337

Scaffold Ga0116135_1101337


Overview

Basic Information
Taxon OID3300009665 Open in IMG/M
Scaffold IDGa0116135_1101337 Open in IMG/M
Source Dataset NamePeatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1042
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m).1 to .2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001734Metagenome / Metatranscriptome644Y
F008261Metagenome / Metatranscriptome336Y

Sequences

Protein IDFamilyRBSSequence
Ga0116135_11013371F001734N/AVLCVLLIPSAVWAQDDAPSLGDLARNLRNDKDKDKAQQPQPLTVIDNDNLTQVMEDAKSARPVDNFRTVLSIDPSGNTLKVSSLDVTCSLSFNARSSSLIKSAPIEELPLTELLKIDGPGSIQDESLQLQVFNGTDWDIKEITVGLTLERKPGENAERAASARVIPAAEGLTPVAVERRSDVTLLYHLKAESKPFSTTEFHENIG
Ga0116135_11013372F008261GGAGMKIWHLAYAALGIAVARWVFKRQPMQVSDPITRFRTSGLL*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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