NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116135_1270214

Scaffold Ga0116135_1270214


Overview

Basic Information
Taxon OID3300009665 Open in IMG/M
Scaffold IDGa0116135_1270214 Open in IMG/M
Source Dataset NamePeatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)665
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m).1 to .2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020296Metagenome224Y

Sequences

Protein IDFamilyRBSSequence
Ga0116135_12702141F020296N/AMLFGSCICFAQQAFDTVAPLRANQFTDQVYVGFDHTRTDYALATSDGNEVATTNGVDIEYDMRRKEHLAYIATVRYGNGTPFDQSLITGAAGASYLLHYRRYEPYVHAMGGYTRLASQHAAGGMYLSNVNSGFMLLFGAGLDMKVSERWGVRAISLEDLYLPFGTARSTYWSVGSGMLYHFGRAR*
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