NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116147_1054653

Scaffold Ga0116147_1054653


Overview

Basic Information
Taxon OID3300009667 Open in IMG/M
Scaffold IDGa0116147_1054653 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNHG3_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1881
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameJapan
CoordinatesLat. (o)34.72Long. (o)135.27Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005744Metagenome / Metatranscriptome391Y
F080011Metagenome / Metatranscriptome115N

Sequences

Protein IDFamilyRBSSequence
Ga0116147_10546531F080011AGGGGGMTWDELEELRDRLSYILERERAEDGFCPIEEGYYVLYRQAARRAVADIDPSHSRDRDHYRILQEIYDAVEEIYDIRSAKLRMAVQDRVVFRRDGERPENLTVEEQERYDMAISLGGHNVE
Ga0116147_10546533F005744AGGAGMDETFEIIKAGAPDAPPEQALYRIQQTYPDGSGGRLNVDWKGLHRLHELIHDRIALEGCVCETCSTRGCHRPATWEIECRGVGVSGRLIYVCDEHAPNEAILSPQDEMRRLVENRD*
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