Scaffold Ga0105252_10004742

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0105252_10004742

Scaffold Ga0105252_10004742

Overview

Basic Information
Taxon OID	3300009678 Open in IMG/M
Scaffold ID	Ga0105252_10004742 Open in IMG/M
Source Dataset Name	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT100
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5042
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location Name	USA: East River, Colorado
Coordinates	Lat. (^o)	38.8898	Long. (^o)	-106.9077	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000195	Metagenome / Metatranscriptome	1659	Y
F001972	Metagenome / Metatranscriptome	609	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105252_100047423	F001972	GGAGG	VRALTRNTLLAVVVAVLVSLVLPSRYDFLDAFTIAFSFCYVGYLVEKALLKLPGIETGGGRVIRVLGWFAGGLWCYVLGRWALVAYGKDTSELPSLIWGGMFFVALQFLVHGVLQATGKPNFFSGEPQETSVQ*
Ga0105252_100047425	F000195	N/A	MDLTVTSQQYDAVRSATHLPDVLKEVLDKADKRAGGYVLHLTYEEATALNELAAWNVHSDGDGNVTAASKHFDDLVRAIITHPDY*

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