NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105252_10036461

Scaffold Ga0105252_10036461


Overview

Basic Information
Taxon OID3300009678 Open in IMG/M
Scaffold IDGa0105252_10036461 Open in IMG/M
Source Dataset NameSoil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT100
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1820
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.8898Long. (o)-106.9077Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000823Metagenome / Metatranscriptome875Y
F000825Metagenome / Metatranscriptome874Y

Sequences

Protein IDFamilyRBSSequence
Ga0105252_100364612F000823GGAGGMRLTVLAILAGFALTALATPAAAQWRPYISHPLGFAFAAPGPMKVEKGTYEAPIAGRRQTTTYAFTDDNIEYKVVVIDMRDIAVNSASLLGEAQFRFQDGKKMLMDAFGRVDRQYGRKLTVDLPNNGGRSMGAFYFVNGRIVSLQATVLPANGDYETPETGRFIDSITFYTVRADDDAIEVPPPG*
Ga0105252_100364613F000825N/AMGSLAAEAQSAWRSYIVKEFGFSFSAPGKVETSTGTFRGEVAGPRQTMIFKSTTNNIEYKVTVMSFKQAQGEGASILGERTYMFQDKKKTLMDTYARVEPGKDSVYGRKMVVELAEGKGRTFGAFYFTNGRLIALEATVLPANGDYESPDPARFVDSVAFIASRAGENAIELQAPKVE*
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