NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115105_10759801

Scaffold Ga0115105_10759801


Overview

Basic Information
Taxon OID3300009679 Open in IMG/M
Scaffold IDGa0115105_10759801 Open in IMG/M
Source Dataset NameMarine eukaryotic communities from Pacific Ocean to study complex ecological interactions - CN13ID_155_C17_100m_0.8um Metatranscriptome (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1099
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Eukaryotic Communities From Various Locations To Study Complex Ecological Interactions

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)33.2898Long. (o)-129.427Alt. (m)Depth (m)100
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001544Metagenome / Metatranscriptome673Y

Sequences

Protein IDFamilyRBSSequence
Ga0115105_107598011F001544N/AKFTLTKDDWGNYSVDFATALRMQQLHPDLLELDIMWGKEVTQKRLQKNHVNISFWYEAGVALMTGDKKHFNEVFRCMQNPDCRLSPSWDYYDWVLCKPRYLDQCKKAGIPIIPTVIYRNGFDAKQCMKDVQRMGWDKFFCKVGHFTFFGAGAINGKTADFLGPRAKELEAYAKENKDSKVFLLQPYTLKPDGQVFDEVRNFFIDGQWRYSVFTHGTDESDGGYYQEPDGPRKEACKALAERAYQEVLKASTWQGKRQTPLLNRIDIGVIPKKGGNSLHRHDNTYFLNEVENICTTWLDRYAPISVQDVMAQAAVKHSLELLAGLLEAKKHMPDERNVREVVKILNERLGPFKDIKI*
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