Scaffold Ga0123335_1003109

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0123335_1003109

Scaffold Ga0123335_1003109

Overview

Basic Information
Taxon OID	3300009680 Open in IMG/M
Scaffold ID	Ga0123335_1003109 Open in IMG/M
Source Dataset Name	Anaerobic biogas reactor microbial communites from Washington, USA - Biogas_R2 time_0 SIP DNA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	23677
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (47.83%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Biogas Reactor → Anaerobic Biogas Reactor Microbial Communites From Washington, Usa

Source Dataset Sampling Location
Location Name	Washington, USA
Coordinates	Lat. (^o)	47.6525	Long. (^o)	-122.3049	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F042655	Metagenome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0123335_100310922	F042655	GAGG	MRDFEVIIPIEYMNFINREIKNPKRLNTELLELWLERELDLENPGSYGNLPTDESHVTVQTLPNGNYKITMSNVCFDMIKSHVQPEPHSRRKLADADILRCWLEIKIEEDETEHRIKVKELT*

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