Scaffold Ga0114958

Basic Information
Taxon OID	3300009684 Open in IMG/M
Scaffold ID	Ga0114958_10000045 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130208_EF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009684 Open in IMG/M

Scaffold ID

Ga0114958_10000045 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130208_EF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	99321
Total Scaffold Genes	106 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (17.92%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

99321

Total Scaffold Genes

106 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

19 (17.92%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Croche, Canada
Coordinates	Lat. (^o)	46.8319	Long. (^o)	-72.5	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Croche, Canada

Coordinates

Lat. (^o)

46.8319

Long. (^o)

-72.5

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F029103	Metagenome	189	Y
F037070	Metagenome	168	Y
F048777	Metagenome	147	Y
F073550	Metagenome	120	Y
F082681	Metagenome	113	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0114958_1000004510	F048777	GGAG	MELTMPKWLNIKVMSIFGLCILAALIASAIINKPHANQGFEDSKNVVLDTSKNTMFPYTTEPINDLDQYELEAVFQNEGDRELKKQQINKLTRQYPLDWTNYPPNSSKFQSEQAKYIEGFSSDSSAADLNKPYKNIGDGNLTPPDTAAIEREERQILATYEPRKSGDMKSYDVYDAQKLLEQIYKPKGLVPSVNKRDDNVFEVVNTRSLKDKVEYEDDLPDAPTTSGHGLGPGEATIEVPPTAVEIAAGRDPFYEPTTSTRSSRTDYMRWTPGLERMFAPTYPTTDWVGKAT*
Ga0114958_1000004522	F037070	N/A	MSDMSSVTSPINPKGTPYEKGSATESYPIQGSSTQPFFPPVCLKSHWDPTKIYSRTVPQTLVPLPLDFRPYTKVCLEYRTSAAGQNAPEVSDDVVFPQGGEVYPPDRYLRAIDKESLLRRMDRRLGTCDDDQYQPPRNSDMYVDRMLVPKSDKPTSRFVEEISMPQALLRAGTYNCRTQADEKNWLRSPRLFNNATKQDRYVGPTEPPRQNIWRDSRRCDDNLGGITAKKLEPDGCRAWGC*
Ga0114958_1000004523	F082681	GAGG	MIEWIVILLIIFCIIVWHYSQSSSQYSLSQIKESQIAISLQTIWEEKKPVVVSEVKVAGIWRSGGLKQTRFWNAQPIWQQYEDAPTALAAVPLSLELTWSEILGISQIESDTILRWFDMNPWLFSTRTEAHIGPDGLRQTYGWATAITCTEGEARCILLHNAQKSKLPPGWKGLKWSEATVAHHPLWTQVQNIEIILRPSTVLLVPPHWIFAIESLDPAKPIWWTRTDLHHPISKWAQGWNEG*
Ga0114958_1000004546	F029103	GAG	MNSVVGAVMRAAVEGFTNPSGAESHRKDPIYADAIAIILTFTISILILSLAGLWLWNFSVVPLFEFARPAKSVFQILGLMLFLSLVHP*
Ga0114958_100000456	F073550	N/A	MSGVPQLPANTLFDVRLKKDQARQRAYNQILEQALQKVAHSATAPNQPTFVYFNVPAFVLGLPGLDLKDCIVYIVFQLRTQGYDVRYTYPNLLWISWAHHERQYLMEKNPIVQSMMPPKMAGPEKRRGASQVSLQQAATSTPNAGPALRAADYTPPAGFVETMERPSPYAKPRQSVRFSDAKDSLGNVLDELWKI*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114958_10000045

Overview

Ecosystem & Geography

Associated Families

Sequences