Scaffold Ga0114958

Basic Information
Taxon OID	3300009684 Open in IMG/M
Scaffold ID	Ga0114958_10000197 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130208_EF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009684 Open in IMG/M

Scaffold ID

Ga0114958_10000197 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130208_EF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	51547
Total Scaffold Genes	80 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (20.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

51547

Total Scaffold Genes

80 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

16 (20.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Croche, Canada
Coordinates	Lat. (^o)	46.8319	Long. (^o)	-72.5	Alt. (m)	Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Lake Croche, Canada

Coordinates

Lat. (^o)

46.8319

Long. (^o)

-72.5

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F030662	Metagenome	184	Y
F038058	Metagenome	166	Y
F039455	Metagenome	163	Y
F048735	Metagenome	147	N
F055388	Metagenome / Metatranscriptome	138	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0114958_100001975	F039455	N/A	MGRYGDIVSFLPVLKNEFDETSQNPSLVISKDYADILEGVSYVNPIVYDGTFDDITGALEYLKTLNKTATATQVVGIPDVLISQVYGNHVGPKIICDSFQQDAWRLAGKLDLWPSQPPLIFDKRDAKREKKLTKGISKDKPWIVVSTGGTSSPFPYSDLLWEILNHSLPDFHIVDLVTIKAEKFYDLLGIMDHPNTHAMILTDSGPLHLSYATQKPVHALITDSPSLWHGTAWRPFYASYTRYKNFPRDVTRILDLIRNPRPKLTHQNIVHVYQKMPWATGDEKRRNELAAKTWESIGCIDLGLDDNCFVRSSAEVIPDETRRIPMIKDMLRLACAGRDDETVLLLTNTDTCVTNNLIQRLEGVLPAYSYRRDFKRLDDALPYDRISAGAKYSGCDFFAMRVGWWRRNHHLFPDMVLGRHSWDRIKRELIKSAGGREIEDLIYHEWHPSLWEGDGLHRDPSNLRNCKLAREWLTERKMPLEELETLNYEGKFKRPDFSKLRT*
Ga0114958_1000019755	F048735	N/A	MIYNGLCLDTPKDTTYGIPYFESSPQFIRELMAYVYTRGEFGRRERIKRGIRIEDTDLKNPTQHMINCFNLIYGNDVLLQSQGIPNNYALDIIDLFCNENDWGIAGCASSGKTFSVAACIVIDWLCAPNVTSTYVASTSLDASEDRLWGKVCTLYRIAMRNIQAQYKGATIGNLVEYRRMIVFESIDTKDTERDYTNAIKALAFPKGGEGKRAVENTRGRKNARMRLFLDELAEMDLYALDTRVNLGANPDFIFGGMANPAATANNPHTELCQPDDPMEWESVTRYTKKWRTRTGVALHLSGEDSPNFKLPDAEIPPFDRFLTIQGEANTLKRCYGNKNALEYWRNVYGWWPDSSVELTIFSKAFIQGCNLNYEPIWSGRTKVVCGFDPAFTAGGDRCAATFCRMGQNDTGRSIGFYLGTREYSSSVGDVFEESIAIQLVKDCIEYGVHPRDFGLDISGDGGKMMRAIIIEWSKYHPEAMFLFPISSMGMPTDRKISNLDQRTCKEAYDRLVTEYWFAVHTAMSTRSLVGIDVDKHGIMINELCSRLYTHKGRKVAVEKKLDMKHRLKKSPDLADSFTYAVQMLRKAGLEFNFEEETVSLDIQEIRDWENKLIHSKNNVEEEQMEEDWGYGGRGCDDDGF*
Ga0114958_1000019756	F030662	N/A	MRLKDRNGPIPSGLWYEYSDDKGTKYRVNGMELTYGASFTNKVKSDMQNNNVQVPDNLEYLIEQQICGRIAGQYCWQEAGDKVANVIHSFANLGDRVAASLGINANLEKTAKGCTSCQKRRQAMNQTLG*
Ga0114958_1000019761	F055388	N/A	MAAQNGVTFSSCQDVDTLFREARTYYNPFFIKKMAINSIYYGRLETETWPLNTLPTMKAFRFGRGWYNPNQPWEQVQSGRCIQNADDVQFETIAHPGTESYSFSLFTKAMRTDWYQLTDFMYRLFPQEEMDHIMATNVNITKNVHEEFARSNWIGGAGHKWVPISNGQSLVSCATPDDQMFIVQPFEGTNEGSFNMGYVYVKMAASSLNNIGLLSLDTLDDILINLQREDDAYRLDVSEAAGRPLLEIIVPDARVLRQLWQYAKQSGGWWESVSDFDDKQLQYSLGIDRVIGNYAFCNDINGVRLNVDWVYNASLPTFNVNDPTTWPRLVRVLPYYPVTTELGCKYIQNPAFQYADFGITNPWVNKAMIKWISPSQSGIGEAQGMTQNYAGDWEWKNPDWECNIKRDQGFFWNQFRMGMQFQDPTLMHSILHRLNNAQLVIPAACTLSPNYAPQYTPDCYACNSTVSQPI*
Ga0114958_1000019778	F038058	N/A	MASHGVQYTVDKTERGIVSDSVTPQPMQRVQIKGDIPTIRAYKDARTARIKSIGESCQSAFSVGGPANETAMGKGTPFNADWI*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114958_10000197

Overview

Ecosystem & Geography

Associated Families

Sequences