NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116144_10252641

Scaffold Ga0116144_10252641


Overview

Basic Information
Taxon OID3300009687 Open in IMG/M
Scaffold IDGa0116144_10252641 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC035_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)921
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameUSA
CoordinatesLat. (o)39.84Long. (o)-89.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F067650Metagenome / Metatranscriptome125N

Sequences

Protein IDFamilyRBSSequence
Ga0116144_102526411F067650N/AMNITIRFVFKRRIDTPPQGSIPVGFTQLRLVDETFEVLDDNFSVNIDNENVNDFSKAIDSKFTKTLKVAGTQKAIDFFKEYYEVRYEGESDYNFLFNSRTGEHCTIYVDGIEVMRGVALLTGITKKNNIVIFELQVINDVKDILNEFKNLYIDELDNYGYEWTFTNVKNLLNTTINDTFIGVAMADGECVSQKNIGGSYTTAIDISKIPIAANLKKIIDKGFKKIGVQYQSNFLNSDRLKALWLCNNKSENLGIW
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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