NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116171_10102584

Scaffold Ga0116171_10102584


Overview

Basic Information
Taxon OID3300009692 Open in IMG/M
Scaffold IDGa0116171_10102584 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNHW2_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1721
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameJapan
CoordinatesLat. (o)35.92Long. (o)139.63Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034443Metagenome174Y
F089755Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0116171_101025841F034443N/APALTDKFFYKYGDEKNKFETCFSSLYDRFGVVSCGNPGTDKDKITPRLFWVGMTGGWATPSELRGFADDNNLSLRYAGSQGIFNLFWKGWVDWIIRTRKTVKIEKQMDFIDLKTMDFTKRYRMNGINYLVSEIAVTLTKSSIKPAQLKCFTSP*
Ga0116171_101025842F089755N/AMIDITESPGLISFAGNPVIFEACSSDYQVSNGSCAHFEMIVCGIDTIEGHQFTLKFAGKTLVFKSAGFTGFDGQLFEVAYYGQTFNDFAGNIYQCFLENYDIQKYYNVTLGPIGAAERKITLEAKNPGDEYSITLTDIAVSGIAQGTNTSGADDVYRDFFSILCLIRDAYGEAIGEDLKPADFIGCARFDISDYLSSKFSTWQLNRFEFPELTGNVRTHGWDYLLKYRVSFAESIAGHVKGLQSTTWKYALAGGLNRELLASLNEKCQDYFSIEENKYKFLTWLPTTKYSRSGVTEKLFFLFQDNPAGIQYRLVVIVNFTDGSHKIINATPMVAFTPYSVAEFKVGFDHLNLVNAVYKKMVRSWEVMLMDSDDEYLSERRIFIYDNRVFDNEKVFFYRNSFSAYD
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