NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116177_10347506

Scaffold Ga0116177_10347506


Overview

Basic Information
Taxon OID3300009696 Open in IMG/M
Scaffold IDGa0116177_10347506 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_STIC10_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)787
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameUSA
CoordinatesLat. (o)41.84Long. (o)-87.68Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F077339Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0116177_103475061F077339N/AVVFQQECETVLRYAEKSDEDVLIMKNNMNTTLELPEGSKATIQGKVIDGKNYLVVEVEQEPEWTKFKRGDVLICPDAEKEIFVIFDEYRNGHSRHYFNCLFNSVYDGDTCWVSELFRKATDAERARFIKWLDEEKGLEWDGEKLVEILKEGDMCIFWDYTSCEAIIAVYRGGIPGNYVDHLAMYWENAIKWDGTREQYEKVLRGELK*
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