NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116216_10110367

Scaffold Ga0116216_10110367


Overview

Basic Information
Taxon OID3300009698 Open in IMG/M
Scaffold IDGa0116216_10110367 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1693
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000065Metagenome / Metatranscriptome2788Y
F007808Metagenome / Metatranscriptome344Y
F013924Metagenome / Metatranscriptome267Y

Sequences

Protein IDFamilyRBSSequence
Ga0116216_101103671F013924GGAGGMNLNMLDPKLIVLAAMVIVIIAVGAWLYVRKRRNTTTAL
Ga0116216_101103672F000065AGAAGGMMTQITNNPIPKLRKAPQPPLSHPGATPDSDRARKPSLAEPPATGQELNPGDRVEELGDFGKPTGVFGTVEQANEDDAVVKWDDDGRVRLHQPWLKKV*
Ga0116216_101103674F007808N/ALSRLGMFYSIWLLAAALAGWAGGKIAEDDGFGTLADILLGITGAFVVRWSLEKIGISVKDVYQLLFSIWGAAAFPAAVRLGVRRHNRSKARSRLRSD*
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