NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115000_10018371

Scaffold Ga0115000_10018371


Overview

Basic Information
Taxon OID3300009705 Open in IMG/M
Scaffold IDGa0115000_10018371 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_128
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5042
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (92.31%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)77.0991Long. (o)-150.2252Alt. (m)Depth (m)58
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F089409Metagenome109N
F105879Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0115000_100183711F105879GAGGMNTKYNITEINPQTIKQVRQMINDSLSVIMEDNNLRFELGNATYDDDSFKFTGFRISLADALTPEQKALEQMLTVRKKADWMKTLDATKIGTDRGLSYKLVGYKPRARVKPWIIQDIRTGSTYVAPDHLIERMFGEVE*
Ga0115000_100183715F089409GGAGGMHNELELIDLESLTFYFSLGEYPDLDTATVRSGKYWDGTIMTKEDKIRFKEDYPQAFYSNLWKFIGQFGK*
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