Scaffold Ga0115000_10118127

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0115000_10118127

Scaffold Ga0115000_10118127

Overview

Basic Information
Taxon OID	3300009705 Open in IMG/M
Scaffold ID	Ga0115000_10118127 Open in IMG/M
Source Dataset Name	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_128
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1778
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location Name	Arctic Ocean: Canada Basin
Coordinates	Lat. (^o)	77.0991	Long. (^o)	-150.2252	Alt. (m)		Depth (m)	58
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F039175	Metagenome / Metatranscriptome	164	Y
F086307	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115000_101181271	F039175	N/A	MSTDTGAKLPIFPFPLTMIYELADNIDALRIPIETLNREMFKNGFEVVEKWKYKCNNCSKEFQYAPTADNPDEQPFEANGDSGDAHPRKKKAVSPTSIPTSSLVCDTCGSNDLARPVPEHRKTLENLMNEPVNSNQQTLEDVARQLERDFEIADNA
Ga0115000_101181274	F086307	N/A	MASASAIHDLLTLLHEEWLDEARKTVIKGMLEDMIDRMEDNINMDDMR*

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