Scaffold Ga0115000_10133423

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0115000_10133423

Scaffold Ga0115000_10133423

Overview

Basic Information
Taxon OID	3300009705 Open in IMG/M
Scaffold ID	Ga0115000_10133423 Open in IMG/M
Source Dataset Name	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_128
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1660
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location Name	Arctic Ocean: Canada Basin
Coordinates	Lat. (^o)	77.0991	Long. (^o)	-150.2252	Alt. (m)		Depth (m)	58
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F009243	Metagenome / Metatranscriptome	321	Y
F050195	Metagenome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115000_101334231	F009243	N/A	NNSMNTNFEYYYNNVPGKGLCRNNLIYTSLVDNNKKQFCQWYYNDTDYHKGHNQVIDPNLMDEKFEREIKFLSIMRKEYPQHIPAYTVDYEWRKIYLEIDGPDMWELAGCNTNDYTSVLPDWDIQMLEIIQAHKDLGLYKYSMHPSSYFIVDGKLKSMNYFFTYDNNDVNISLRSVMSHISEDRQADLFPKMETMGIDVDAPTNHNAIQQLAFESFKTNFRDDVMEKAKQIYA*
Ga0115000_101334233	F050195	N/A	FINNAYRDQQQLKLFNALKDKVDMMVVMGSVSRLYPELIPTDYVQDKQALAEACRLESINPNGIPVLHLDLGFLEGTTVSGDDPAEFLSDSTTPLEDVVDTIIFWAGKPTIRQVEFRWKLTDHLRAELERINPNLDPSRIQF*

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