Scaffold Ga0115000_10233673

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0115000_10233673

Scaffold Ga0115000_10233673

Overview

Basic Information
Taxon OID	3300009705 Open in IMG/M
Scaffold ID	Ga0115000_10233673 Open in IMG/M
Source Dataset Name	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_128
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1204
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location Name	Arctic Ocean: Canada Basin
Coordinates	Lat. (^o)	77.0991	Long. (^o)	-150.2252	Alt. (m)		Depth (m)	58
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000126	Metagenome / Metatranscriptome	2021	Y
F065113	Metagenome	128	Y
F086160	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115000_102336731	F065113	N/A	MYEAIEHYKVYKQKKELKNNSKKLVSEYDKISFDKWMKSLITKNGVTKY*
Ga0115000_102336732	F086160	N/A	MTRNELKELWFSIPKQVNKKEMKVIVVDINGGFYKITTDVEGYYSSSTQSGYGDNVLNTVLDRIKVNDGVNDLSEYKLIIK*
Ga0115000_102336733	F000126	N/A	MRDYKITRNKGEWYNAIVTDSYGKKYQNYFEHANEASEWVYYIWSKEDWFNSVNSQELLANAIENCKRIDKKSSRRAIL*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.