NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115000_10253350

Scaffold Ga0115000_10253350


Overview

Basic Information
Taxon OID3300009705 Open in IMG/M
Scaffold IDGa0115000_10253350 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_128
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1148
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)77.0991Long. (o)-150.2252Alt. (m)Depth (m)58
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027315Metagenome / Metatranscriptome195Y
F070879Metagenome / Metatranscriptome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0115000_102533502F070879AGGMLGFSPFASAPFASTGSGAIVTQQANIIGEAIVKANANAKWLDGGNIVGEAILKTDGTIAGSGWTRVNPDTPEWDMNKSQDWNQIK*
Ga0115000_102533503F027315GAGGMHIVAIVALLGAVGLGFENDWKIAKGFKSYSECREANPKFVNSMTEWKYDPCSITAYKLQNK*

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