Scaffold Ga0116160_1012294

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0116160_1012294

Scaffold Ga0116160_1012294

Overview

Basic Information
Taxon OID	3300009715 Open in IMG/M
Scaffold ID	Ga0116160_1012294 Open in IMG/M
Source Dataset Name	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNAS2_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5604
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (42.86%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Candidatus Methanofastidiosa	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location Name	Japan
Coordinates	Lat. (^o)	43.77	Long. (^o)	142.37	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F037746	Metagenome / Metatranscriptome	167	N
F074119	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0116160_10122942	F037746	GGAGG	MPVDIEWAKANDTVGQEFESNYIPGTTDKDIEDARALMEKLLKKYGSRDALEADERDWAKYRQAMYVIASRSKDTMDAANKAREELIKRKNLLSQFFDDNREILFKLPEWARINLRKYTDYGLLIDQEYLWQALGELGEDGLTEHLLNVANYIYLDTGFLGGRREDYDALQKGPVRSIYHRPTCKSQKTVHPDCGSGCSKV*
Ga0116160_10122943	F074119	GAGG	MSEIQVFEVLAKILPYLVTLGIGAFAGWELVKTKIHELAEFFNVVDEALYDDAVTEKEFRAIWEKGRALFQWSFAAKKGEA*

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