NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116160_1062375

Scaffold Ga0116160_1062375


Overview

Basic Information
Taxon OID3300009715 Open in IMG/M
Scaffold IDGa0116160_1062375 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNAS2_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1734
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameJapan
CoordinatesLat. (o)43.77Long. (o)142.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033445Metagenome / Metatranscriptome177N
F058173Metagenome / Metatranscriptome135N
F068794Metagenome / Metatranscriptome124N

Sequences

Protein IDFamilyRBSSequence
Ga0116160_10623752F033445AGAAGMVVELEKGRICEQQVVHYEKVTQELTEQIGLLQEQVGMMSKKFDETLKQLEVERKLAEEKDKARIEEIKQAGKPQWTMLFGGFGAGALLVGALILLL*
Ga0116160_10623753F058173AGGAGGMKMTYGIVAVVVAVALIAAFSYGRYHPSKDMIGELTEQVRQETAKQYEKRIAELDKQLKVSQTAYAESQKRYNSIIKKLKEIKDGKDAIKPPQDATELNSRFVALGYTPVSK*
Ga0116160_10623754F068794GGAGGMAKKAKGLVFNHQTITIRGSFINMLFTMVLMILFIAAAFNASVAANLKLVAELIIAIYAISYGVWQGKKYLEGKKEKKDEEAT*
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