NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116160_1158751

Scaffold Ga0116160_1158751


Overview

Basic Information
Taxon OID3300009715 Open in IMG/M
Scaffold IDGa0116160_1158751 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNAS2_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)915
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameJapan
CoordinatesLat. (o)43.77Long. (o)142.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F067884Metagenome / Metatranscriptome125N
F097600Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0116160_11587511F067884N/ALVESVSMRDMQGAVNRYTVTAVSGDALGGWLEWFSALARQAQKFVLYDEDQVSMLREITDTVRVYDISMEVPWGTVGDKPESRVDRAHADFAETDWVH*
Ga0116160_11587512F097600GGAMRALRDWLAGNGGVPITHIAWVDNAGVERARDIVTQRYINPAAPESIMFRQYLPSASSANGYTLTTIRAYNAQTGGTMFAESEFDPFGGGVAKTANNQITVQWIHSFSNGGGA*
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