NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0123364_1107185

Scaffold Ga0123364_1107185


Overview

Basic Information
Taxon OID3300009754 Open in IMG/M
Scaffold IDGa0123364_1107185 Open in IMG/M
Source Dataset NameMarine microbial and viral communities from Louisana Shelf, Gulf of Mexico - GoM_2015_C6C_198_18m (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1221
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location NameLouisana Shelf, Hypoxic Zone, Gulf of Mexico
CoordinatesLat. (o)28.8679Long. (o)-90.4764Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F106115Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0123364_11071851F106115AGCAGMAVATAATIQAHLLGGTYPESTLDANNIFDYEQYTTRRRYPSCEVITTQPESTVETRRSTDTTVAFEIRYYDKNLGLRTDDVSTQREVENAITARMETMVLQDYKIVFESKTWSRQSVQRDGGHPAYLVSTLKITVRQVNVVEMPVDGVLKFKYDGSSVDNNPNVDYTYTNVFDVDLQSGYRDIEEGYTGSNIPRHFAGHIQGRFICNIMVKNADLGTTGDKLNKMPLLRSNGEKPEIKFEYTDKTADEVTITNTFTAEPESVQMMYKTSDAVVFRLIARLISDNIIT*
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