NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116130_1212693

Scaffold Ga0116130_1212693


Overview

Basic Information
Taxon OID3300009762 Open in IMG/M
Scaffold IDGa0116130_1212693 Open in IMG/M
Source Dataset NamePeatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)613
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m).4 to .5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003942Metagenome460N
F022571Metagenome213Y

Sequences

Protein IDFamilyRBSSequence
Ga0116130_12126931F003942N/AVELIEVHSEYLECRFLVAKDEWESGKTLLNIFSPLDGNVLGFPHYRLHRDNISATGPKLPDGTTAQPGMAEAIEIQRQAGHAIYADHLSAMLYGNGLNPARS*
Ga0116130_12126932F022571AGGMQITVWSVAADDNNGTYASVHETESAAYRRLIQLTVDSDNKDDVAKAEAFMEAEDFDSLDEWIHEEVIEALNTYSVEQQTLDLSALPAPAPTT

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