NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116134_1013571

Scaffold Ga0116134_1013571


Overview

Basic Information
Taxon OID3300009764 Open in IMG/M
Scaffold IDGa0116134_1013571 Open in IMG/M
Source Dataset NamePeatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3447
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m).4 to .5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003892Metagenome / Metatranscriptome463Y
F050141Metagenome / Metatranscriptome145Y
F102358Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0116134_10135712F102358GAGGMLCSAKLGQALQQMPTILDVVRKFRDFLKDESAVAAIEYIALSAGITLAIITAVKPANLSPACHACGRPMRFARAISKFRRHPELRIYECDQCRETVVEEWRPRESTGRQMPNSRQGARTLAAGLTVLRKRGGIRNFDIAVILGTWAGSIAFGWKQQPYWLVVPLVVCVAYMISLIGRHWSGLVLGRRKIYEMWMSGKTAGLALYTLLKTWWWVRVEERYRKNHDEFPRRDLALDTVCPKEPLLFSADQMNSLLIHWGVA*
Ga0116134_10135715F050141GAGMVHKAVAQRDVEYLNELLSKETDENRRTILLRLLTDAKEKLRQAEEQEKKD*
Ga0116134_10135716F003892AGGAGMADAPITDQEIAILCDVLEGWGTNLNAHKRMVLDQLIAKGFVVLADQGSSAKYKLTGKAQRLLAERGVGLSGG*
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Institute for Fundamental Biomedical Research
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