NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116134_1035510

Scaffold Ga0116134_1035510


Overview

Basic Information
Taxon OID3300009764 Open in IMG/M
Scaffold IDGa0116134_1035510 Open in IMG/M
Source Dataset NamePeatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1956
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m).4 to .5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035367Metagenome172Y
F063304Metagenome129N

Sequences

Protein IDFamilyRBSSequence
Ga0116134_10355101F063304N/AMRLNNSTPVRAVSPHIYNLLDQRLAQQGAPLHQLIRTYAAAVPAQPASPEELLNQLTAVLGKWAADPAQRVKPETALAEEHLRLMDDISKIQGPEGASRLEATLVRVVANQFARNMGSALRIPDASKLICLSDVKPVNAYSAFAQRTALIGIQPHEWVRRWVESQRDLFRNKPTDGGYLRLAQRLSGDWPAQPGQGDAFQRALATFLTG
Ga0116134_10355102F035367N/AMPAAAKWMFILVLNAVLCGFFGLGIAVMHFLWLEYAMVRWPKVRYTDDYQTSFALACAAAVFLLTTLRQIKTRLESKSLRPAEIGFILIFAAIVMVGLTPVPGSNFPQYLYEMNYPGNKDTSKQEPKSEEEAKPLKLKRDYP*
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