NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116134_1070744

Scaffold Ga0116134_1070744


Overview

Basic Information
Taxon OID3300009764 Open in IMG/M
Scaffold IDGa0116134_1070744 Open in IMG/M
Source Dataset NamePeatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1295
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m).4 to .5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005822Metagenome / Metatranscriptome389Y
F014867Metagenome259Y
F066496Metagenome / Metatranscriptome126N

Sequences

Protein IDFamilyRBSSequence
Ga0116134_10707442F014867GAGGMRTLFPSSYDRADVLMSAGCSTFVSAALILVIPRFGILLLEILLGLFFIGCALVARKRLRRQALGKNVSAKSSDARTRWFDRYDVFMILAVVVVQTSTAGLLRKAGLAEGTVGILPLFLFAASILLKPRAVEFIEGRRKTKQAGRNSNNLVNLAAQAPASESGTKTVVHAATKNGDLE*
Ga0116134_10707443F005822GGAGMKVSEQPNAVNGAESIADSKITHPPTSEGRRSRAVTDSKPTLPKNTATRRRRNRQDNSETSGEERFFLASGSSDGAVPALGRECGSEAEAIIDAFRERVNFYRLSEFQTRADVGPSGEPILRKDGLKKNNPAS*
Ga0116134_10707444F066496AGGAGMSERNQIVVVLIVALMLGAFVDRSTALKIVAGVALLWTLQNQPT
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