NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0123357_10176114

Scaffold Ga0123357_10176114


Overview

Basic Information
Taxon OID3300009784 Open in IMG/M
Scaffold IDGa0123357_10176114 Open in IMG/M
Source Dataset NameEmbiratermes neotenicus P4 segment gut microbial communities from Petit-Saut dam, French Guiana - Emb289 P4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2514
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location
Location NamePetit - Saut dam, French Guiana
CoordinatesLat. (o)5.0626Long. (o)-53.0462Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026034Metagenome199Y
F092284Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0123357_101761141F026034GAGGMYAREKLPKLKTKSKLIKFQEEINGLIEEFLEEDEMNITGINNLIYAAATIMTQTLNEPSKRSKNRRDIKFWKIRMQKQISSWRKELSIIAETGTGSDNGKLNRKKRKI
Ga0123357_101761142F092284GGAMMIRKQNCNTQPGRRKEQRSSDSTEEKGNCTEETQHGQSQSPPNIEVGQENGKKLNKRTRWSREEMKEVLWCFTYIKEKTLRENYKEVYKLWRERTKINIGAKALLNQKNYILRAQRITTLEIDEIKENIILKIGDDTEDYTNGVNGDNMDTNVIEH*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.