NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0123357_10358872

Scaffold Ga0123357_10358872


Overview

Basic Information
Taxon OID3300009784 Open in IMG/M
Scaffold IDGa0123357_10358872 Open in IMG/M
Source Dataset NameEmbiratermes neotenicus P4 segment gut microbial communities from Petit-Saut dam, French Guiana - Emb289 P4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1383
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location
Location NamePetit - Saut dam, French Guiana
CoordinatesLat. (o)5.0626Long. (o)-53.0462Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026034Metagenome199Y
F033855Metagenome176Y
F065891Metagenome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0123357_103588722F026034AGGMCEREKLPKLKTNSKFIKLQKEINGVIEELLEEDEMNITDINNLIYAAATIMTQTLNEPSKRSKNRSNVKFWKIRMQKQISSWRKKLSIIAETGTRCDNGKLNRKKR*
Ga0123357_103588723F033855GGAGMKEALWCFKYVKENTLRENYKEVYKLWRERNPVTRMNIDAKALLIQKNYILKAQRITTVEIDEIKENIRLKIGDDTENYTNRVNGDKMDTRITEHQKRDQENENADFGKVENNKHLSAEGEQHTVKNTLKEDL*
Ga0123357_103588724F065891N/ANFEKWRPSDSSSLTAAGGAILQWTEDIPSYSWDSDDN*
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