NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114999_10204440

Scaffold Ga0114999_10204440


Overview

Basic Information
Taxon OID3300009786 Open in IMG/M
Scaffold IDGa0114999_10204440 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_126
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1636
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR2-AD10-C281(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)77.0991Long. (o)-150.2252Alt. (m)Depth (m)213
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009213Metagenome / Metatranscriptome321Y
F080519Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0114999_102044403F009213AGGMIKEKKVYLRTTRNLYYKQEKPNLKVYYSYTTPVALEINGQLKVSENRWSITTGRHLTWIDGGNKKARLKRDEFNQLLKQHKPEPNFLKTVSMVSAMFGLMSQGQDQKKTNDQKKRFFNKVDGLSFPDDWETLSEEEKTRRLEKVEKVGLSS*
Ga0114999_102044404F080519GAGMKKCIICNSRPSEIWNWVLHGSICKPCMKRHGDSHHEKIGTGVYPNNYIPSDYYNLINNGKR*
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Institute for Fundamental Biomedical Research
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