Scaffold Ga0126307_10000899

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0126307_10000899

Scaffold Ga0126307_10000899

Overview

Basic Information
Taxon OID	3300009789 Open in IMG/M
Scaffold ID	Ga0126307_10000899 Open in IMG/M
Source Dataset Name	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	19690
Total Scaffold Genes	25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (76.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location
Location Name	UC McLaughlin Reserve (Lake County, CA)
Coordinates	Lat. (^o)	38.8692	Long. (^o)	-122.4283	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F041055	Metagenome	160	Y
F091338	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126307_1000089918	F041055	AGGAG	MDKNSVTRTSPPSTKAIVASEDFCKQTAALLLCDRGPIHDAFIGEPVEEVLEMVRWALSHEDDEGFDTAEVLTGWARKRGRGAWGDRPRRAERDPYEELAKALGSYWKEHPEELTTLLDRAEASLNGWS*
Ga0126307_1000089919	F091338	GGTGG	VAARKPELHHAAPRCLLTLHERANGTTSLDGEAIQAWVEWEWEAMRWRVPVEISRTELEELIERSALLLERERHRLVHEGDWRRWGSRGGRETLRRYGADWFSLLALRRWDRISAAELEAARVIR*

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