NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126307_10002858

Scaffold Ga0126307_10002858


Overview

Basic Information
Taxon OID3300009789 Open in IMG/M
Scaffold IDGa0126307_10002858 Open in IMG/M
Source Dataset NameSerpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11730
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (76.47%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location
Location NameUC McLaughlin Reserve (Lake County, CA)
CoordinatesLat. (o)38.8692Long. (o)-122.4283Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008713Metagenome / Metatranscriptome329Y
F016718Metagenome / Metatranscriptome245Y
F027265Metagenome / Metatranscriptome195Y

Sequences

Protein IDFamilyRBSSequence
Ga0126307_1000285811F016718GGTGGMPLSEYDAKEALRAAADWLGASELPGSTAAREGISDTIPLVMMGLIEPADLDDLAAIVEEHGHAVGEAATLEEAQRAQLKEAVKAAFDYVRLLRRDAAR*
Ga0126307_1000285813F008713GGAMELYKGFRIRAYQDWSGLWLAETNKPLARRPGAGDHEDTDAEYIATPSGHPTQEAAIAFIKQMIDSPSTIR*
Ga0126307_1000285814F027265N/AMASQNASANAKQLLKALIDRANSIAPEGRVNQVAADTGLKEGEIRPAIKYAKAQGWLEEAKFGHTRGWLSITPSGKAAANS*
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