NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126307_10016994

Scaffold Ga0126307_10016994


Overview

Basic Information
Taxon OID3300009789 Open in IMG/M
Scaffold IDGa0126307_10016994 Open in IMG/M
Source Dataset NameSerpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5415
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location
Location NameUC McLaughlin Reserve (Lake County, CA)
CoordinatesLat. (o)38.8692Long. (o)-122.4283Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009947Metagenome310Y
F010385Metagenome304Y
F079464Metagenome115N
F080964Metagenome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0126307_100169941F079464AGGCGGVLAGYLPKEWNGKRVAVRFTRGRGFDARLVGDNAGGITVEP
Ga0126307_1001699410F080964N/APGRSSSAQQRKIKSEAIPQWAQGLYYNQGVFREALVYYDDEALYFELKGKDSGIVRFSFEMLETLGKVIEEQQEEQQASPQ*
Ga0126307_100169945F009947GGAGGMASQDRIRAVGAELWDMDWTAERAADALRYLGRNFPECLGNLRALDEHEEAAHEAAMRGDKDAYLESLRSYCKAGRDEALRIRRGAA*
Ga0126307_100169949F010385AGGAGGMDTTESSAPAHPSTEDHDHQDERPHACIDGWVTIGQIALDPETGEETEEFAMYICRRCAEDK*
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