NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126307_10019728

Scaffold Ga0126307_10019728


Overview

Basic Information
Taxon OID3300009789 Open in IMG/M
Scaffold IDGa0126307_10019728 Open in IMG/M
Source Dataset NameSerpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5077
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location
Location NameUC McLaughlin Reserve (Lake County, CA)
CoordinatesLat. (o)38.8692Long. (o)-122.4283Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007136Metagenome357Y
F010385Metagenome304Y
F025442Metagenome201Y

Sequences

Protein IDFamilyRBSSequence
Ga0126307_100197282F010385AGGMATEKSSAPHAHPSTEYQDQDHPHACNDGWVTIGQIALDPETGEEVEEYALYLCRRCADSR*
Ga0126307_100197287F025442GAGGLKPQAVPQVLRCLTLGGYTATVDDAELRIRGPQPLAGPLPASIKAQRDELIDFLNEWADGVWPPAPGSGLREVEQLLGCGLGTALDVVEATQRRAAA*
Ga0126307_100197289F007136AGGAGGVVGRSGGITVRTLDYFELLVAASIFALLSGVLATLCVKYEFRGLAWFWVAAFFTSALVGAYCLVKLL*
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