NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126307_10046218

Scaffold Ga0126307_10046218


Overview

Basic Information
Taxon OID3300009789 Open in IMG/M
Scaffold IDGa0126307_10046218 Open in IMG/M
Source Dataset NameSerpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3394
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location
Location NameUC McLaughlin Reserve (Lake County, CA)
CoordinatesLat. (o)38.8692Long. (o)-122.4283Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003133Metagenome / Metatranscriptome505Y
F027648Metagenome / Metatranscriptome194Y
F035468Metagenome / Metatranscriptome172Y
F046866Metagenome150Y

Sequences

Protein IDFamilyRBSSequence
Ga0126307_100462181F035468AGGAGGMTHPGRARDVNEAARRFAETLADSYRLVYEQAQESAARQQQRAREFSE
Ga0126307_100462184F003133GAGMLKLLLGRICCVVGLLLSTGGFVVAILGASVNLSAGAVGIALGVLGYFLGARRLGAASVVLGTAAVFFMAAASTGLIPGVAPLGHGYD*
Ga0126307_100462185F046866AGGAGLSKDNEICLAWLADALQRLRQEGQTNGRTKVVSYLEAVSEEVVFEMKALPRS*
Ga0126307_100462186F027648AGGAMVRQEETPTNKDKGLQGGRYARAEEELYKKALALLEKCKIEIQSSGKEIPQLESAA*
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