NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0115012_10715729

Scaffold Ga0115012_10715729


Overview

Basic Information
Taxon OID3300009790 Open in IMG/M
Scaffold IDGa0115012_10715729 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT10 Metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)804
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameTropical Atlantic Ocean
CoordinatesLat. (o)2.405Long. (o)-13.602Alt. (m)Depth (m)80
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003286Metagenome / Metatranscriptome496Y
F071406Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0115012_107157291F071406N/ATFDKIVKALKDIKVRATIHLNDEDKISIALGRDYYRKKNPEGAGDLGDMIEDRLKKAGIQKGYNSPPGVSIMADSSDIGDKKYTKAQHDIRGGI*
Ga0115012_107157292F003286AGGTGGVAVQMLDKVLVMKPRRSHLVESTPVESAVDNTIDNIYGEPQPDRFDEIIDLLKQGNIYGEKKDITMGVVEVPIEKQITIDKASTKGLKSETYVNKSESKIDKLRKLRRGN*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.