NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115012_10740473

Scaffold Ga0115012_10740473


Overview

Basic Information
Taxon OID3300009790 Open in IMG/M
Scaffold IDGa0115012_10740473 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT10 Metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)791
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameTropical Atlantic Ocean
CoordinatesLat. (o)2.405Long. (o)-13.602Alt. (m)Depth (m)80
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011123Metagenome295Y
F017760Metagenome / Metatranscriptome239Y

Sequences

Protein IDFamilyRBSSequence
Ga0115012_107404731F017760AGGAGMIPGTLFNIPMWRLPCLNFSKKKKQLEQLVKAYPEKKHGIQPFSTNRQHDRSGFADAFANIMETELEMLSKKLNKTIVFQDIWSVSYKRGDYHTPHDH
Ga0115012_107404732F011123AGGAGMAKFVTFKNANPPYEGTPILINTDHIISVYEDLTAGKKVALWAKDNFWHVEDTIDEVYDKLGLEYKRDKKEIQ*

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