NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115012_10787066

Scaffold Ga0115012_10787066


Overview

Basic Information
Taxon OID3300009790 Open in IMG/M
Scaffold IDGa0115012_10787066 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT10 Metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)769
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameTropical Atlantic Ocean
CoordinatesLat. (o)2.405Long. (o)-13.602Alt. (m)Depth (m)80
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F082529Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0115012_107870661F082529N/ANIDSAEQEIQEGEIFADDKRPFTGDIEPISRTRIRHVRYYEGDEPPKRYDDGQDVGMPEKRVYGADIPGLANQVTDWARSNQEEVIQNMPKEGDKIDLSKFMIFGGSYEDTANASGRAVLMKQLLGDKNVEFAGAMRQNSDTEETLDADLIGDVIAQYNGRCEQIMNDYNNRMAQTYTDYEVGDDGGDGAFIKPWAAFIAKWPVDEWKRLPGNNEEVVWGSVDELVSIYGDIFEDSNSYTPVIRRVREEIHLTMKV
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