NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115012_11277887

Scaffold Ga0115012_11277887


Overview

Basic Information
Taxon OID3300009790 Open in IMG/M
Scaffold IDGa0115012_11277887 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT10 Metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)620
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameTropical Atlantic Ocean
CoordinatesLat. (o)2.405Long. (o)-13.602Alt. (m)Depth (m)80
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021555Metagenome / Metatranscriptome218N
F056059Metagenome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0115012_112778871F056059N/ASGISLTPPEPITPENIKDKIVSDDELRQKIINGELVDEKLEATLFPNGKPSK*
Ga0115012_112778872F021555AGGAGMKQLNITKQELHTFIDKEIDKYKSKKGRAFFYKKPKRMEIVGEKRVMRFDTKDRQFQIDGATGKRLYKKGGKRTTTPEHNMLVTDLDIREGHKFRNVPMNQRLRYLLIGKKCLKFSYLADSDSFKVEFPKATR

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