Scaffold Ga0115012_11308479

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0115012_11308479

Scaffold Ga0115012_11308479

Overview

Basic Information
Taxon OID	3300009790 Open in IMG/M
Scaffold ID	Ga0115012_11308479 Open in IMG/M
Source Dataset Name	Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT10 Metagenome
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	614
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location Name	Tropical Atlantic Ocean
Coordinates	Lat. (^o)	2.405	Long. (^o)	-13.602	Alt. (m)		Depth (m)	80
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F035489	Metagenome	172	Y
F046009	Metagenome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115012_113084791	F046009	AGG	MSTLKIIPEEKPDVNKVQTCPLLDKSAMSRNVFTNEECKRIIEIGRTWEHIDAEIQTKNPEAESVKNEDYRNCKMYGPPVDKTETWL
Ga0115012_113084792	F035489	N/A	SSSKQHANQYHIIWLDESLRHITWGLKPQFESMSTGLCALQLALETGYDEIDVIGFSGLKDRNYKNVYEGTKNYTFDPAAPDKVRVPETYVPLDASHWESVYMKLVQQNPQTRVNLI*

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