NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126374_10579813

Scaffold Ga0126374_10579813


Overview

Basic Information
Taxon OID3300009792 Open in IMG/M
Scaffold IDGa0126374_10579813 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_12
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)824
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014637Metagenome261Y

Sequences

Protein IDFamilyRBSSequence
Ga0126374_105798132F014637AGGLSEILRLLSEHQRSYRHRILAELRVAFADALDGRGDQALERLRQARAKLSPRLVQYQFSYYTEINLLIALGRIKEARVLLDARGPVPTGEVLRFSHWIAEMHLGVAEGKLDIDDAELHDRRRKGLSMTTGRDLLLLCAWAYAQRGEHDEAAFAWRHAMEREGSPRIDVTMPSLVAWMTGYLREHPE
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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